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		<title>OriginDB: User's Manual</title>
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				<h3> <b>OriginDB</b> - User's Manual </h3>
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		<hr />
		<div class="content">
			<a name="intro"></a>
			<h1> Introduction </h1>
				<p>
					<i>OriginDB</i> is an application created to faciliate collaboration among researchers in the origin of life field. It includes:
					<ul>
						<li>
							A database which stores user entered <strong>reactions</strong>, <strong>references</strong>, and <strong>compounds</strong>
						</li>
						<li>
							An interface to add information to the database and edit information already contained in the database
						</li>

						<li>
							An interface for users to create chemical pathways between compounds using reactions which have been cited from the literature
						</li>
					</ul>
				</p>

				<p>
					<i>OriginDB</i> was created at Georgia Institute of Technology under the supervision of Nick Hud for The Origins Center. It has been written by Jason Power &lt;power.jg@gmail.com&gt; with contributions from Travis Gockel and Brian Plattenburg. For more information on the project see <a href="http://origindb.googlecode.com"> http://origindb.googlecode.com</a>. <i>OriginDB</i> is free and open source software and all of the information in the database is held under the <a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/us/"> Creative Commons Attribution-Share Alike 3.0 United States License </a>.
				</p>

				<h2> The Database </h2>
				<p>
					In order to browse the database without adding any new information, no username or password is required. If, however, you would like to add new reactions or pathways to the database you must contact the database administrator, Nick Hud, at &lt;SOME ADDRESS&gt; and he will respond as soon as possible.
				</p>
				<p>
					After receiving write access to the database you can now log in and add new reactions as well as create and upload your own pathways. All of the content which you add to the database will be licesensed under the <a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/us/"> Creative Commons Attribution-Share Alike 3.0 United States License</a>. If you do not agree to have your work released under this license you will be unable to contribute to the <i>OriginDB</i> project.
				</p>

				<h2> OriginDB Interface </h2>
				<p>
					This is some basic information about the interface. How to view the two main components and what they are.
				</p>

				<a name="contact"></a>
				<h2> Contact Information </h2>

				<p>
					[Some contact info.]
				</p>

				<a name="req"></a>
				<h1> Requirements </h1>

				<p>
					In order to run <i>OriginDB</i>, you must have a a computer running either the Windows XP SP3 or greater or Linux operating system. Currently, Linux is only supported if building from source. See the <a href="http://origindb.googlecode.com/"> project page</a>.
				</p>

				<p> 
					For Windows, the requirements are:
					<ul>
						<li>
							Windows XP with Service Pack 2 or newer
						</li>
						<li>
							A monitor capable of a resolution of at least 1024x768
						</li>
						<li>
							An Internet connection
						</li>
					</ul>
				</p>

				<a name="install"></a>
				<h1> Installation </h1>
				<p>
					(These are the instructions for installation on Windows. For installation instructions for other platforms see the <a href="http://origindb.googlecode.com"> project page</a>.)
				</p>
				<p>
					In order to install <i>OriginDB</i>, the first step is to download the most recent installer from the project page. <a href="http://code.google.com/p/origindb/downloads/list"> http://code.google.com/p/origindb/downloads/list </a>
				</p>
				<p>
					Next run the installer by double clicking on the downloaded file. From this point on, you can follow the installation wizard that is displayed.
				</p>
				<div class="step">
					<p>
						When the installation wizard first starts click the next button.
					</p>
					<div class="detailImg">
						<img src="images/install1.png"/>
					</div>
				</div>
				<div class="step">
					<p>
						Next, The license agreement will be displayed. It is the GNU GPL, which basically says that it's open source software. Select "I accept the agreement" and click the next button.
					</p>
					<div class="detailImg">
						<img src="images/install2.png"/>
					</div>
				</div>
				<div class="step">
					<p>
						The next screen presents you with the option of changing the installation path. This is where all of the files for running OriginDB will be stored. For all but power users the default option will be fine.
					</p>
					<div class="detailImg">
						<img src="images/install3.png"/>
					</div>
				</div>
				<div class="step">
					<p>
						The next screen presents you with the option of changing the location of the start menu folder. Again, only power users will want to chage this from the default. This screen also presents you with an option of not creating a start menu item at all. This means the only way to run the application will be to find it in your Program Files.
					</p>
					<div class="detailImg">
						<img src="images/install4.png"/>
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				</div>
				<div class="step">
					<p>
						The next screen gives you an option to create a desktop shortcut or not. If a desktop shortcut is created then there will be an icon on your desktop that will launch OriginDB.
					</p>
					<div class="detailImg">
						<img src="images/install5.png"/>
					</div>
				</div>
				<div class="step">
					<p>
						Finally, the next screen presents you with a summary of the options you chose. After reviewing the selections, press the install button to begin the installation.
					</p>
					<div class="detailImg">
						<img src="images/install6.png"/>
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				</div>
				<div class="step">
					<p>
						The final screen presents you with an option to launch OriginDB. If you do not want to launch it at this time uncheck the box and in the future you can launch it from the start menu or possibly the desktop (depending on your installation choices). After you have made your decision, click the "Finish" button to finish the installation. 
					</p>
					<div class="detailImg">
						<img src="images/install7.png"/>
					</div>
				</div>
				<p>
					Congraduations, you now have OriginDB installed. Next, read "<a href="user manual.html#database">Accessing the database</a>" to learn how to connect OriginDB to a database.
				</p>

				<a name="database"></a>
				<h1> Accessing the Database </h1>
				<p>
					There are two ways to access the database. You can either only view all of the information within the database, or you can obtain write access and add new content and edit content already in the database. Currently the only way to obtain write access to the database is contact an administrator. The administrators can be found in the <a href="#contact"> Contact information</a> section.
				</p>
				<p>
					Currently, the database lives at the url: origindb.appspot.com This is a Google-hosted database maintained by the administrators in the <a href="#contact"> contact information</a> section. This is what you should put for the "Database Host" box in the login screen.
				</p>
				<p>
					It is possible for someone else to run their own database that can be accessed with OriginDB. If you would like information on how to do this, or to find any other databases accessable with <i>OriginDB</i> please visit the <a href="http://origindb.googlecode.com"> project page</a>.
				</p>

				<h2> License Information </h2>
				<p>
					If you have access to the database, any content you add is automatically under the <a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/us/"> Creative Commons Attribution-Share Alike 3.0 United States License</a>. More information can be found by following the link. Basically this says that if anyone wants to copy, distribute or transmit the content, or to adapt the content, then they must cite this database (which implicitly cites the user who added the information).
				</p>

				<h2> Logging into the Database </h2>
				<p>
					If you would like to only view the information in the database, in order to login all you have to do is insert the corect database host and then click the login button.
				</p>
				<p>
					If you have access (a username and a password provided by an administrator) to the database, then to login first input the database host. Next, click the "Write To Database" check box, then fill in your username and password. If you have forgotten your username or password, contact an administrator found in the <a href="#contact"> Contact information</a> section.
				</p>
				<div class="detailImg">
					<img src="images/login.png"/>
				</div>

				<h2> Updating User Information </h2>
				<p>
					If you have access to the database and you are already logged in, then you can change your user information by selecting <i>File</i> &rarr; <i>Change User Information</i> you can update your real name (which is what appears when others see the content you have added), your institution, and your contact email. By selecting <i>File</i> &rarr; <i>Change Password</i> you can change your password to something else. (NOTE: Please change your password after receiving the initial password from an administrator.)
				</p>
				<div class="detailImg">
					<img src="images/userinfo.png"/>
				</div>
				<div class="detailImg">
					<img src="images/password.png"/>
				</div>

				<a name="interface"></a>
				<h1> The Database Editing Interface </h1>

				<p>
					The database editing interface is where any user can search the database and where logged in users can add information to and edit the database. In order to find the database editing interface you just need to open <i>OriginDB</i>. If you are currently using the pathway viewer or the compound editor, close the open component and you will find the database editing interface. 
				</p>
				<p>
					There are 3 separate parts to the database editing interface:
					<ul>
						<li> Reference Editor </li>
						<li> Compound Editor </li>
						<li> Reaction Editor </li>
					</ul>
				</p>
				<p>
					There is also a Search Results page which can be hidden and shown from either the menu or by dragging the slider between the Search Results page and the main content page (reference, compound, or reaction details page).
				</p>

				<a name="reference"></a>
				<h2> References </h2>
			TALK ABOUT SEARCHING!!!
				<p>
					Before a reaction can be added to the database, the journal reference for that reaction must be entered into the system. This can be done at the add reference screen, accessable by selecting <i>Reference</i> &rarr; <i>Add New Reference</i>, as shown below:
				</p>
				<div class="detailImg">
					<img src="images/reference1.png"/>
				</div>
				<p>
					You have the option of either inputting all of the data manually, or importing the data from a variety of different reference formats. Below you can find information on each method.
				</p>
				<p>
					This will bring you to the <i>Reference Details</i> screen, where all of the information for a new reference can be entered. These details include the title of the publication, year of publication, author(s), journal of publication (including volume and page numbers), and an abstract for the publication. Any information which is not known can be left blank, and will be stored as unknown (the reference can later be upated to contain more complete information).
				</p>
				<div class="detailImg">
					<img src="images/reference2.png"/>
				</div>

				<a name="import-ref"></a>
				<h4> Importing from a File </h4>
				<p>
					OriginDB gives the user the option to import the reference from many common reference formats. It is suggested that you use the reference import rather than manually entering the data to both save time and improve the accuracy of the database. In order to import a reference either click the "Import From File" button on the Reference page, or select <i> Reference </i> &rarr; <i> Import Reference. </i> A file selection dialog is displayed. Select the file you would like to import (a list of acceptable formats is below) and press the open button. If the file is not an acceptable format then you will receive an error.
				</p>
				<a name="ref-formats"></a>
				<h4> Acceptable Formats for References </h4>
				<p>
					Currently there is a small number of formats OriginDB can accept to import a reference. If there is a format that you would like to be able to import, but it currently is not support, contact the developer in the <a href="user manual.html#contact"> contact section</a>. Specically it can accept:
				</p>
				<ul>
					<li> RIS format
						<p>
							This format is a common export format for many reference applications. Specifically, if you export a reference from http://pubs.acs.org/ by clicking on <i> Download Citation </i> and then selecting <i> Citation and abstract for the content below </i> this is in RIS format and OriginDB can accept it.
						</p>
						<div class="detailImg">
							<img src="images/importACS.png"/>
						</div>
					</li>
					<li> From Web of Science
						<p>
							Web os Science is a commonly used database of scientific journals. If you select a paricular article in the Web of Science (WoS) interface, at the bottom of the page will be an option to export the citation. Select <i> Save to other Reference Software </i> and there select <i> Save to Plain Text </i> and press <i> Save. </i> When prompted to save the file, save it somewhere you will remember with any filename.
						</p>
						<div class="detailImg">
							<img src="images/importWoS1.png"/>
						</div>
					</li>
					<li> EndNote Format
						<p>
							If you export an EndNote or EndNote Web reference in EndNote format, or RIS format OriginDB will be able to import the reference.
						</p>
					</li>
				</ul>

				<p>
					After entering all of the known information about the reference, the reference can be added to the database by clicking the <i>Add Reference</i> button at the top right. Once a reaction has been entered, it is time to move on to adding the compounds necessary for the reaction.
				</p>

			<a name="compound"></a>
			<h2> Compounds </h2>
			TALK ABOUT SEARCHING!!!
			<p>
				The major components of a reaction are the compounds. These are broken up into reactants and products. To add a compound to the database, go to <i>Compound</i> &rarr; <i>Add New Compound</i>, as shown below:
			</p>
			<div class="detailImg">
				<img src="images/compound1.png"/>
			</div>
			<p>
				You are now at the <i>Compound Details</i> page. This page allows the user to add compounds, along with any relevant details, to the database. Contained in this page is
			</p>
			<ul>
				<li> Name
					<p>
						This is the commond name for the compound. One thing to note is that there can only be one compound with a particular name in the database. Therefore if you try to add another compound with the same name as one that has already been entered OriginDB will give you an error. Also, there is no way to link two names to the same compound, so please refrain from using chirality specific names like "l-" and "d-".
					</p>
				</li>
				<li> Formula
					<p>
						This is the formula for the compound. For the most part this will be automatically filled in for you if you import the compound from PubChem or manually edit the structure. It is likely that the formula will not be displayed in specific order you are used to seeing it, this is normal. In order to store this information in the database and allow it to be searched we must rearrange the formula into our own format.
					</p>
				</li>
				<li> IUPAC Name
					<p>
						This is the name given the compound by ther IUPAC. See <a href=http://en.wikipedia.org/wiki/IUPAC_nomenclature> http://en.wikipedia.org/wiki/IUPAC_nomenclature </a> If you do not know the IUPAC name leave it blank.
					</p>
				</li>
				<li> InChI
					<p>
						The InChI code is a specific string used to represent the compound's structure (similar to SMILES). For the most part this will be filled in for you automatically. If you do not know the InChI string leave it blank.
					</p>
				</li>
				<li> Structure
					<p>
						This is a window for viewing the structure of the compound currently selected. Below the viewing window is a button to show the implicit hydrogens called <i> Show Hydrogens</i>. When the button is selected the hydrogens will show, and when the button is pressed again the hydrogens will hide. If there is nothing shown in this window then there is no structure data for the current compound.
					</p>
				</li>
			</ul>
			<div class="detailImg">
				<img src="images/compound2.png"/>
			</div>
			<p>
				Once all of the details of the compound have been input, the compound can be stored to the database by clicking the <i>Add Compound</i> button in the top right.
			</p>

			<a name="pubchem"></a>
			<h4> Importing from PubChem </h4>
	
			<p>
				Rather than inputting all of the information for a compound manually, OriginDB provides a way for you to import the entire compound at once from the PubChem database. PubChem is an open database which among other things contains information on many small molecules. More information about PubChem can be found <a href="http://pubchem.ncbi.nlm.nih.gov/help.html"> http://pubchem.ncbi.nlm.nih.gov/help.html</a>
			</p>
			<p>
				In order to access the PubChem import dialog, either press the <i> Import from PubChem </i> button found on the Compound Details page or select <i> Compound </i> &rarr; <i> Import PubChem Compound </i> from the menu. The PubChem import dialog currently only allows you to search by a compound name. Type a name into the <i> Compound Name: </i> field and click the <i> Search </i> button to perform the search. A list of the first 20 items found on PubChem will appear below your search. Select the name of the item you wish to import and either double click on it or click the <i> Open </i> button to import the compound into OriginDB.
			</p>
			<div class="detailImg">
				<img src="images/importPubChem.png"/>
			</div>

			<a name="import-structure"></a>
			<h4> Importing a Structure from a File </h4>

			<p>
				When adding a compound manually OriginDB provides you with a way to import the structure of the compound from a file generated by any molecular editor. In order to import a structure file, click on the <i> Browse... </i> button under the structure viewer on the Compound Details page. This will launch a file browser for you to choose a file. Currently only one filetype is supported which is "molfile." This is also sometimes called "sdf." All molecular editors (including ChemDraw) should be able export in this filetype.
			</p>
			

			<a name="compound-editor"></a>
			<h4> Using the Compound Editor </h4>
	
			<p>
				OriginDB also includes an internal structure editor. This editor can be accessed by clicking the <i> Edit Structure </i> button that is below the structure viewer on the Compound Details page. See the Compound Editor help file for specific help with the compound editor.
			</p>

			<a name="substruct"></a>
			<h2> Substructure Search </h2>
			<p>
				OriginDB also provides a substructure search feature. When using substructure search, you can find all of the compounds in the database which shares a common part of its structure with the structure you are searching. (Note: There is a chance for "false positives" in this search. You may get some compounds returned from the search that are not exact matches to the substructure.)
			</p>
			<p>
				In order to use the substructure search, select <i> Compound </i> &rarr; <i> Substructure Search </i> from the menu. The page that is shown only has the stucture window on it. From here you can access the compound editor to manually draw your compound, import the stucture from a file, or import the stucture from PubChem. All of this is discussed above.
			</p>
			<div class="detailImg">
				<img src="images/substruct.png"/>
			</div>

			<a name="prodAndReact"></a>
			<h2> Product / Reactant Search </h2>
			<p>
				On the Compound Details page, if you have a compound current selected, then the options <i> Search for Reactants </i> and <i> Search for Products </i> appear. The former, <i> Search for Reactants </i> will return all reactants which in some reaction react to produce the compound you are currently viewing. Conversly, <i> Search for Products </i> will return all products in the reactions where the current compound compound is a reactant. After your search, if in the Search Results page you select a compound, you can either view the details of that compound or you can view the reaction in which the given compounds reacts to form or is formed by the compound you are currently viewing. To view the reaction, press the <i> View Reaction </i> button at the bottom of the Search Results page.
			</p>

			<a name="reaction"></a>
			<h2> Adding a Reaction </h2>
	
			<p>
				The final step is to enter the reaction data at the <i>Reaction Details</i> screen. This screen can be reached through <i>Reaction</i> &rarr; <i>Add new Reaction</i>. On this screen, the compounds which are reactants and products of this reaction can be entered into the appropriate sections, along with a mole percentage or percent yield for each. Then any relevant catalysts for the reaction can be added and entered into the reaction. Next, the reference for this reaction can be searched up and added to the reaction. <b>Please note that a reaction cannot be stored without a related reference</b>. Here is also where the conditions required for the reaction to occur can be entered. Once all of this information is entered correctly, the reaction can safely be stored into the database using the <i>Add Reaction</i> button on the bottom right.
			</p>
			<div class="detailImg">
				<img src="images/reaction1.png"/>
			</div>
			

			<a name="pathway"></a>
			<h1> The Pathway Interface </h1>

				<p>
					A pathway is a set of connections between reactions which form a plausable chemical pathway from one compound to another compound. In <i>OriginDB</i>, pathways can be built from any of the reactions stored in the system. To access the <i>Pathway Editor</i> window, select <i>View</i> &rarr; <i>View Pathway Visualization</i>, as shown below:
				</p>
				<div class="detailImg">
					<img src="images/pathway1.png"/>
				</div>
				<p>
					The <i>Pathway Editor</i> contains three main sections. The largest section, taking up the top portion of the window is the pathway visuaization pane, which contains a view of the current pathway which can be zoomed, panned, and edited here. The bottom right portion of the screen contains a reaction search filter system, which can be used to search for reactions stored in <i>OriginDB</i> to add to the pathway. To obtain detailed information of any reaction in the currently displayed pathway, simply select it and the details will show up in the reaction details pane. The bottom left section contains the reaction details, which is populated when a reaction is selected either in the pathway visualization pane or in search results list.
				</p>

			<a name="view"></a>
			<h2> Pathway View </h2>
				<p>
					The pathway view is where the current working pathway is shown. Also in this part of the pathway window you can edit the name and description of the pathway.
				</p>
				<div class="detailImg">
					<img src="images/pathway2.png"/>
				</div>
				<p>
					There are 4 tools that you can use in the pathway view.
				</p>
				<ul class="images">
					<li>
						<a name="draw"></a>
						<img class="inline" src="images/draw-freehand.png"/>
						<p>
							This is the draw tool. While this tool is selected you can add more connections between reactions. Often the connections can be automatically added, however there are times that OriginDB will not be able to assume the best connections. If there are missing connections in the diagram, simply click on the first occurance of the compound name and then drag the arrow to the next occurance of the same compound. The arrows will automatically be the correct color.
						</p>
					</li>
					<li>
						<a name="erase"></a>
						<img class="inline" src="images/draw-eraser.png"/>
						<p>
							This is the erase tool. While this tool is selected you can erase connections and reactions that you no longer want in the pathway viewer. Simply click on the object you want to erase and it will be erased.
						</p>
					</li>
					<li>
						<a name="move"></a>
						<img class="inline" src="images/transform-move.png"/>
						<p>
							This is the move tool. Click and drag on the reaction you want to move. If you want to move multiple reactions, hold <i>Ctrl</i> while selecting the reactions you want to move, and then click and drag the items.
						</p>
					</li>
					<li>
						<a name="clean"></a>
						<img class="inline" src="images/tools-wizard.png"/>
						<p>
							This is the clean tool. It will take the current pathway and clean it so that all arrows are pointing from left to right and if any reactions are hidden it will show them.
						</p>
					</li>
				</ul>
				<p>
					For all of the edit tools in the pathway viewer (except the move tool) you can undo and redo actions. The only caveat to undo and redo is sometimes if you delete a reaction with connections and then undo the deletions the connections won't always appear correctly. However, this is simple to fix with the draw tool described above.
				</p>

			<a name="filters"></a>
			<h2> Filters </h2>
				<p>
					In order to find reactions in the database to add to your pathway, OriginDB provides a search / filter interface. After adding all of the information you want to filter your search on to the filter view, a search will be performed on the database and all reactions which match that filter will be returned. Note: Sometimes searching for reactions will take a long time (2+ minutes). Be patient while the search is being performed.
				</p>
				<div class="detailImg">
					<img src="images/pathway3.png"/>
				</div>
				<p>
					There are many details about the reactions you can filter on. When you add a compound or a catalyst to a list on the filter you will be searching for all reactions which have that compound or catalyst.
				</p>
				<ul>
					<li> Reactants
					<p>
						In order to add a reactant, either search for it in the <i> Full Search </i> tab or while a reaction is selected in the <i> Pathway View </i> open the <i> Reaction Details </i> tab. Select the item you want to add to the reactants (it must be a compound) and then drag that item to the <i> Reactants </i> list.
					</p>
					</li>
					<li> Products
					<p>
						In order to add a product, either search for it in the <i> Full Search </i> tab or while a reaction is selected in the <i> Pathway View </i> open the <i> Reaction Details </i> tab. Select the item you want to add to the products (it must be a compound) and then drag that item to the <i> Products </i> list.
					</p>
					</li>
					<li> Catalysts
					<p>
						In order to add a catalyst, either search for it in the <i> Full Search </i> tab or while a reaction is selected in the <i> Pathway View </i> open the <i> Reaction Details </i> tab. Select the item you want to add to the catalysts (it must be a catalyst) and then drag that item to the <i> Catalysts </i> list.
					</p>
					</li>
					<li> Temp
					<p>
						This is either the maximum or the minimum temperature for a reaction. Select the proper radio button for the filter you want to apply. If you want a specific range of temperatures then it is necessary to add another filter.
					</p>
					</li>
					<li> Pressure
					<p>
						This is either the maximum or the minimum pressure for a reaction. Select the proper radio button for the filter you want to apply. If you want a specific range of pressures then it is necessary to add another filter.
					</p>
					</li>
					<li> Time
					<p>
						This is either the maximum or the minimum time for a reaction. Select the proper radio button for the filter you want to apply. If you want a specific range of times then it is necessary to add another filter.
					</p>
					</li>
					<li> pH
					<p>
						This is either the maximum or the minimum pH for a reaction. Select the proper radio button for the filter you want to apply. If you want a specific range of pH then it is necessary to add another filter.
					</p>
					</li>
					<li> Solvent
					<p>
						This is a specific solvent you want all of the returned reactions to have.
					</p>
					</li>
					<li> State
					<p>
						This is the state you want all of the returned reactions to have. If mutiple states are selected, the reactions returned must have all of the states.
					</p>
					</li>
				</ul>
				<p>
					After you have added all the information you want to add to the filter, press the <i> Search / Apply Filter </i> button. The database is being queried on your specific search so it may take some time (2+ minutes). After the search is completed, either a dialog will show that tells you no reactions were found, or the reactions will appear in the search results pane. From here, select the reaction you want to add to the pathway and click the <i> Add to Pathway </i> button.
				</p>
				<div class="detailImg">
					<img src="images/pathway4.png"/>
				</div>

			<a name="pathway-io"></a>
			<h2> Saving and Loading Pathways (from File)</h2>
				<p>
					OriginDB provides you a way to save and load your pathways from files. In order to save your pathway, go to <i> File </i> &rarr; <i> Save to File...</i>. Here you will be presented with a dialog to select the path and filename to save to. 
				</p>
				<p>
					In order to load a pathway from a file, select <i> File </i> &rarr; <i> Load Pathway...</i>. You will be presented a dialog to select the file to load from. Note: When you load a pathway it does not replace the current pathway, it merges with it. This way you can merge two pathways together.
				</p>

			<a name="pathway-db"></a>
			<h2> Saving and Loading Pathways (from the Database)</h2>
				<p>
					OriginDB also provides a way to save pathways to the database where other users can search, view, and expand on your pathway. In order to save your pathway to the database, select <i> File </i> &rarr; <i> Save to Database...</i>. 
				</p>

			<a name="pathway-search"></a>
			<h2> Searching for Pathways Created by Other Users </h2>
				<p>
					This is currently not implemented.
				</p>
	

			<a name="trouble"></a>
			<h1> Troubleshooting </h1>
				<p>
					Please report any and all bugs you encounter! In order to report a bug, go to <a href="http://code.google.com/p/origindb/issues/list"> http://code.google.com/p/origindb/issues/list </a> and click "New Issue." Here you will be promted to give details about the issue you encountered. After an issue is added the developers will address the issue as soon as possible. If the issue is important, do not hesitate to also email the developers in the <a href="#contact"> Contact information</a> section.
				</p>
	

			<a name="admin"></a>
			<h1> Administration </h1>
				<p>
					In order to administer OriginDB you need to be given explicit permission from another administrator. The administration tools are included in the standard Windows distribution, however.
				</p>

			<a name="users"></a>
			<h2> Adding Users </h2>
				<p>
					In order to add users, open the User Add tool. You will be promted for your login information. Note: you will only be able to log into this tool if you have been given administrator privileges. 
				</p>
				<div class="detailImg">
					<img src="images/useradd1.png"/>
				</div>
				<p>
					Once you have logged in, you will be presented with a list of information to input about the user. The only required field is username and password. If you are unsure of other information, the user can change it at a later date. For the password, I suggest creating a random initial password, giving it to the new user, and ensuring the user changes it as soon as possible. Under the user privilege field, if you select "Admin" then the newly created user has all o9f the administrative privileges discussed in this section. 
				</p>
				<div class="detailImg">
					<img src="images/useradd2.png"/>
				</div>
	

			<a name="acknowledge"></a>
			<h1> Acknowledgments </h1>
				<p>
					I would like to acknowledge Travis Gockel and Brian Plattenburg for help developing during our Senior Design Project at Georgia Tech. Also, the application was built using the <a href="http://qt.nokia.com/"> Qt Toolkit </a> and the database is hosted on <a href="http://code.google.com/appengine/"> Google App Engine</a>.
				</p>
				<p>
					I would also like to thank Dr Nick Hud at Georgia Tech for his advisement and help designing the application, as well as Greg Springsteen at Furman University for his input on the application.
				</p>
	

			<a name="contribute"></a>
			<h1> Contributing </h1>
				<p>
					Please help us out! Go to <a href="origindb.googlecode.com"> http://origindb.googlecode.com/ </a> or email the developers in the <a href="#contact"> Contact information</a> section for details.
				</p>
	
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